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Malaria Cell Atlas

Plasmodium falciparum Atlas

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SmartSeq2 cell view (): PCA UMAP

UMAP visualisation of single-cell transcriptomes from across asexual and transmission stages of the parasite

SmartSeq2 gene view:

k-nearest neighbors (kNN) force-directed graph of highly variable features across cell types

Chromium 10x cell view (): PCA UMAP

Prinicipal Component Analysis view of single-cell transcriptomes of Chromium 10x dataset based on highly variable genes. Parasites were sampled across several days upon stress induced gametocyte induction of NF54 strain

UMAP visualisation of single-cell transcriptomes from across asexual and transmission stages of the parasite. Parasites were sampled across several days upon stress induced gametocyte induction of NF54 strain

Chromium 10x gene view:

k-nearest neighbors (kNN) force-directed graph of highly variable features across cell types

cell view (): PCA UMAP

gene view: